University of Vienna   
Department of Microbial Ecology
There is a new probeBase version! Please follow this link to experience the new probeBase.


Short nameAccession no.Specificity 
1027R  pB-03775 Bacteria 
1046R  pB-03777 Bacteria 
1046R  pB-03736 Bacteria 
1050R  pB-03806 Bacteria 
1061R  pB-03765 Bacteria 
1061R  pB-03807 Bacteria 
1061Rv  pB-03813 Bacteria 
1099F  pB-03724 Bacteria 
1100R  pB-03780 Bacteria 
1114aR  pB-03796 Archaea 
1114mcR  pB-03800 Nanoarchaea 
1114R  pB-03728 Bacteria 
1391R  pB-03836 Bacteria 
1391R  pB-03778 Bacteria 
1401R  pB-03731 Bacteria 
1406mcR  pB-03801 Nanoarchaea 
1407R  pB-03729 Bacteria 
1492R  pB-03824 Bacteria 
1492R  pB-03711 Bacteria 
1492R  pB-03771 Bacteria 
1492Rc  pB-03761 Bacteria 
1513mcR  pB-03802 Nanoarchaea 
217kF  pB-03794 Nanoarchaea 
27F  pB-03784 Bacteria 
27F  pB-03817 Bacteria 
27F  pB-03708 Bacteria 
338  pB-03782 Bacteria 
343F  pB-03720 Bacteria 
347F  pB-03721 Bacteria 
39F  pB-03785 Bacteria 
41F  pB-03786 Bacteria 
511mcR  pB-03798 Nanoarchaea 
515mcR  pB-03797 Nanoarchaea 
517F  pB-03756 Bacteria 
518F  pB-03714 Bacteria 
518R  pB-03716 Bacteria 
518R  pB-03818 Bacteria 
519mcF  pB-03795 Nanoarchaea 
520F  pB-03772 Bacteria 
527f  pB-03819 Bacteria 
530F  pB-03779 Bacteria 
533F  pB-03789 Bacteria 
533R  pB-03803 Bacteria 
534R  pB-03725 Bacteria 
536r  pB-03820 Bacteria 
630R  pB-03810 Bacteria 
63F  pB-03787 Bacteria 
64F  pB-03788 Bacteria 
68F  pB-03823 Bacteria 
6F  pB-03783 Bacteria 
784F  pB-03722 Bacteria 
784F  pB-03764 Bacteria 
798R  pB-03726 Bacteria 
802R  pB-03774 Bacteria 
803R  pB-03727 Bacteria 
805R  pB-03842 Bacteria 
806R  pB-03752 Bacteria 
8aF  pB-03791 Archaea 
8F   pB-03769 Bacteria 
8f, 616V  pB-03814 Bacteria 
8F, pA  pB-03843 Bacteria 
8mcF  pB-03793 Nanoarchaea 
907R  pB-03718 Bacteria 
908R  pB-03790 Bacteria 
909F  pB-03770 Bacteria 
909F  pB-03811 Bacteria 
917F  pB-03723 Bacteria 
917F  pB-03804 Bacteria 
917Fw  pB-03812 Bacteria 
926r  pB-03821 Bacteria 
934mcR  pB-03799 Nanoarchaea 
967F  pB-03735 Bacteria 
967F  pB-03776 Bacteria 
967R  pB-03872 Bacteria 
968F  pB-03730 Bacteria 
970F  pB-03805 Bacteria 
986F  pB-03773 Bacteria 
9bF  pB-03792 Bacteria 
A109f  pB-03837 Archaea 
A16F  pB-03834 Archaea 
A21f  pB-03815 Archaea 
A2F  pB-03832 Archaea 
A329  pB-03839 Archaea 
A333F  pB-03833 Archaea 
A519F   pB-03755 Archaea 
A519R  pB-03757 Archaea 
A616D  pB-03868 Archaea 
A693r  pB-03840 Archaea 
A806R  pB-03758 Archaea 
A8f (Bergen)  pB-03857 Archaea 
A934b  pB-03838 Archaea 
Ab779F  pB-03742 Archaea 
Ab789F  pB-03739 Bacteria, Archaea, Eukarya 
Ab906F  pB-03740 Bacteria, Archaea, Eukarya 
Ar9r  pB-03816 Archaea 
Arch_344F  pB-03766 Archaea 
Arch1017R  pB-03768 Archaea 
Arch1048R  pB-03863 Archaea 
Arch1492R  pB-03750 Archaea 
Arch20F  pB-03712 Archaea 
Arch344F  pB-03831 Archaea 
Arch349F  pB-03747 Archaea 
Arch516F  pB-03748 Archaea 
Arch855R  pB-03767 Archaea 
Arch8F  pB-03749 Archaea 
Arch915F  pB-03875 Archaea 
Arch915R  pB-03746 Archaea 
Arch934F  pB-03830 Archaea 
Arch958BF  pB-03852 Archaea 
Arch958BF  pB-03851 Archaea 
Arch958F  pB-03858 Archaea 
Arch958F  pB-03871 Archaea 
Arch958R  pB-03841 Archaea 
Arch958VR  pB-03853 Archaea 
Arch9Fa   pB-03854 Archaea 
Arch9Fab  pB-03856 Archaea 
Arch9Fb  pB-03855 Archaea 
B1055f (Bergen)  pB-03762 Bacteria 
b341F  pB-03808 Bacteria 
b785  pB-03809 Bacteria 
Bac1046Rb  pB-03864 Bacteria 
Bac1046Rc  pB-03865 Bacteria 
Bac1046Rd  pB-03866 Bacteria 
Bac927R  pB-03710 Bacteria 
Bac967Fb  pB-03859 Bacteria 
Bac967Fc  pB-03860 Bacteria 
Bac967Fd  pB-03861 Bacteria 
Bac967Fe  pB-03862 Bacteria 
Bact340F  pB-03828 Bacteria 
bact363F  pB-03705 Bacteria 
Bact531R  pB-03704 Bacteria 
Bact806R  pB-03829 Bacteria 
Bakt_341F  pB-03844 Bacteria 
Bakt_805R  pB-03845 Bacteria 
bio-pBR5'.SEF  pB-03846 Bacteria 
bio-pJBS-V3.SEF  pB-03847 Bacteria 
bio-pJBS-V3.SER  pB-03878 Bacteria 
B-V3.ASR  pB-03849 Bacteria 
E806R  pB-03759 Bacteria 
GM12R  pB-03850 Bacteria 
GM3F  pB-03717 Bacteria 
GM4R  pB-03719 Bacteria 
P1425  pB-03870 Bacteria, Archaea, Eukarya 
P338f  pB-03826 Bacteria 
P518r  pB-03827 Bacteria 
P609D  pB-03822 Bacteria 
P609R  pB-03876 Bacteria 
P63F  pB-03825 Bacteria 
P699D  pB-03867 Bacteria, Archaea, Eukarya 
P699R  pB-03869 Bacteria, Archaea, Eukarya 
Parch340F  pB-03733 Archaea 
Parch519R  pB-03734 Archaea 
pBR-V1.ASF  pB-03877 Bacteria 
pBR-V1.ASR  pB-03848 Bacteria 
pH   pB-03781 Bacteria 
Pra46F  pB-03732 Archaea 
Primer 2  pB-03715 Bacteria 
Primer 3  pB-03713 Bacteria 
R357  pB-03706 Bacteria 
U1053F  pB-03741 Bacteria, Archaea, Eukarya 
U1053R  pB-03874 Bacteria, Archaea, Eukarya 
U1510R  pB-03745 Bacteria, Archaea, Eukarya 
U1517R  pB-03835 Bacteria, Archaea, Eukarya 
U341F  pB-03737 Bacteria, Archaea, Eukarya 
U515F  pB-03751 Bacteria, Archaea, Eukarya 
U519F  pB-03753 Bacteria, Archaea, Eukarya 
U529R  pB-03743 Bacteria, Archaea, Eukarya 
U751F  pB-03738 Bacteria, Archaea, Eukarya 
U779F  pB-03754 Bacteria, Archaea, Eukarya 
U906R  pB-03873 Bacteria, Archaea, Eukarya 
UA1406R  pB-03709 Bacteria, Archaea, Eukarya 
UA1406R  pB-03744 Bacteria, Archaea, Eukarya 
Uni1390R  pB-03760 Bacteria, Archaea, Eukarya 
Uni1392R  pB-03707 Bacteria, Archaea, Eukarya 
Uni522R  pB-03763 Bacteria, Archaea, Eukarya 


If you use probeBase as a tool in your published research, we ask that this paper be cited:
Loy A, Maixner F, Wagner M, Horn M. 2007. probeBase - an online resource for rRNA-targeted oligonucleotide probes: new features 2007. Nucleic Acids Res. 35: D800-D804.  Full text
Suggested wording: (i) "Oligonucleotide probe sequences have been deposited at probeBase.", or (ii) "Details on oligonucleotide probes are available at probeBase."
by Alexander Loy, Frank Maixner, Michael Wagner, Matthias Horn
Questions, comments, bug reports, and suggestions are welcome at